OQTANS

We present a Machine Learning powered platform for quantitatively analyzing RNA-seq experiments, called oqtans. Oqtans is integrated in the easy-to-use Galaxy framework [1] and builds on NGS analysis methods developed in the Rätsch Laboratory and by others, which can be freely combined... Our programs are free, open source and standalone, and can be downloaded from their respective Supplement page (links to the left)... The current revolution in sequencing technologies allows us to obtain a much more detailed picture of transcriptomes via RNA-Sequencing. We have developed the first integrative online platform, Oqtans, for quantitatively analyzing RNA-Seq experiments. It is based on the Galaxy-framework and provides tools for read mapping, transcript reconstruction and quantitation as well as differential expression analysis