What allows is for you to give a text file with a list of samples that should probably be excluded from further analyses. While you can produce this list yourself, the tool will produce a list of samples that do not pass certain thresholds. These thresholds are based on read lengths, sequence quality, coverage and assembly quality. You can adjust these thresholds to meet your needs...
An extensive workflow to process Nanopore and Illumina sequencing for bacterial genomes.